GenomiX by VE3 is a cloud-native genomics analytics platform built for both clinical and research contexts. Designed to meet the complex data and workflow demands of healthcare providers, academic researchers, biopharma companies, and national health systems like the NHS, GenomiX unifies multi-omics data management, reproducible workflows, and AI-powered analysis within a single composable architecture.

With native support for leading genomics workflow languages (e.g. Nextflow, CWL, WDL), real-time integration with sequencing and LIMS systems, and scalable compute infrastructure, GenomiX helps organisations reduce workflow fragmentation, enhance reproducibility, and ensure regulatory compliance. Key benefits include:

• Seamless integration of multi-source genomic and clinical data

• AI-driven insights with native support for machine learning environments

• Composable infrastructure deployable across AWS, Azure, or GCP, including NHS Secure Data Environments

What are the key features of GenomiX?

Container-native workflows for reproducible bioinformatics

GenomiX supports containerised environments built on Docker and Singularity, orchestrated via Kubernetes to ensure portability and reproducibility of genomic pipelines. It supports common workflow engines, including:

• Nextflow, WDL, CWL, and Snakemake

• Integration with Nextflow Tower and Cromwell for workflow execution

• Preconfigured workflows (e.g. FastQC, BWA-MEM, GATK) with the option to bring custom tools (e.g. FreeBayes, ANNOVAR)

This infrastructure allows users to version, scale, and deploy complex genomic analyses with confidence.

Flexible multi-omics data management and harmonisation

The platform ingests and harmonises diverse genomic data formats and types, supporting full multi-omics workflows:

• Compatible formats: FASTQ, BAM, CRAM, VCF, BED, GFF, CSV/TSV

• Omics support: RNA-seq, ChIP-seq, methylation, liquid biopsy

• Real-time ingestion from NGS instruments, LIMS, and CROs

• Ontology-based harmonisation for metadata standardisation across cohorts

A Bring Your Own Bucket (BYOB) model and tiered storage architecture support long-term scalability and cost efficiency.

Integrated AI/ML environments for genomic analysis

GenomiX integrates with modern AI environments and provides built-in access to common bioinformatics libraries:

• Supports Databricks, SageMaker, and VSCode Online

• Tools: JupyterLab, RStudio for scripting and visualisation

• Libraries and models: XGBoost, CNNs, BERT, DESeq2, edgeR, GSEA

• GPU/FPGA acceleration supported for tools like DRAGEN, Sentieon, and DeepVariant

These tools enable advanced statistical analysis and predictive modelling directly within the platform.

Comprehensive API ecosystem and interoperability

Built on an API-first architecture, GenomiX ensures deep interoperability with both research and clinical ecosystems:

• RESTful APIs and SDKs for automation and system integration

• Connectors to EHRs, LIMS, clinical data platforms, and registries

• FHIR Genomics Adapter to support NHS clinical interoperability standards

• Support for both structured and unstructured data ingestion

This makes GenomiX a suitable backbone for both translational research and operational genomics in healthcare.

Advanced governance, audit, and compliance frameworks

Designed to meet strict data governance and compliance requirements, GenomiX includes:

• Role-based access control (RBAC/ABAC) at dataset, sample, or study level

• Full audit trails, version tracking, and tamper-proof logs

• Support for NHS Identity, Azure AD federation, and pre-signed secure data links

• Compliant with NHS DSPT, GDPR, HIPAA, and aligned to NIST security standards

Fine-grained permissioning and audit reporting are built in to support clinical accreditation and research oversight.

Scalable cloud and hybrid deployment models

GenomiX is designed for deployment flexibility to meet institutional and national requirements:

• Available as SaaS, self-managed, or hybrid deployments

• Hosted in NHS Secure Data Environments or client-specific VPCs

• Elastic compute scaling, including GPU/FPGA options

• Suitable for distributed lab networks and centralised bioinformatics cores

This enables institutions to scale operations without compromising on control or compliance.

To summarize

GenomiX delivers a genomics platform that combines flexibility, reproducibility, and compliance, helping clinical and research organisations accelerate discoveries and reduce operational overheads. Key benefits include:

• Faster time to insight with automated, scalable, and container-native workflows

• Streamlined data management across diverse omics types and sources

• AI-powered interpretation for precision medicine and research exploration

• Secure and compliant collaboration across institutions and jurisdictions

• Cost efficiency through flexible deployment and storage lifecycle policies

• Customisable infrastructure to meet evolving research and clinical requirements

GenomiX stands out by integrating all critical components — data, workflows, AI, and compliance — into a unified, NHS-aligned platform for genomics innovation.